FastQCFastQC Report
Wed 31 May 2023
EGAF00007958789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400566
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38160.9526519974236456No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26020.6495808431070036No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22460.5607066001607726No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15190.3792134130205759No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG12100.30207256731724613No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11700.29208669732328757No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11630.2903391700743448No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11450.2858455285770634No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9850.24590204860122927No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9510.23741405910636448No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8060.20121528037826478No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8050.2009656336284158No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6450.1610221536525816No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6420.16027321340303471No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6320.15777674590454507No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6200.1547809849063575No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6120.1527838109075658No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5640.14080076691481552No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5230.130565250171008No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA4910.12257655417584118No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4470.11159209718248678No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4250.10609986868580959No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4130.10310410768762202No Hit
CCGAAAGGCTCTAACTATTGGCGTAACCGTG4070.10160622718852824No Hit

[OK]Adapter Content

Adapter graph