FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430568
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30100.6990765686256294No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23260.5402166440608684No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG17000.3948272978948737No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13860.3219003734601736No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG13820.32097136805336207No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12390.2877594247598521No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11900.2763791085264116No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11190.25988926255550804No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9920.23039334088924396No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8930.20740045707066018No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8570.19903940840935694No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8560.19880715705765406No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG7730.1795302948663161No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7480.17372401107374447No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7190.1669887218743613No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6830.1586276732130581No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6550.15212463536537782No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6120.14213782724215454No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5290.12286096505081659No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5250.12193195964400513No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5180.12030620018208506No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5110.11868044072016498No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA4790.11124839746567325No Hit
CCGAAAGGCTCTAACTATTGGCGTAACCGTG4460.10358410285947865No Hit

[OK]Adapter Content

Adapter graph