FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958795

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958795
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430270
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54631.269667882957213No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA38730.9001324749575847No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT37710.8764264299160992No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT37130.8629465219513329No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28440.6609803146861273No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24880.5782415692472169No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA23920.5559299974434657No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC22520.5233922885629954No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20770.4827201524624073No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC18290.4250819253027169No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG18040.41927162014549No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC17260.4011434680549423No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17130.39812210937318426No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16480.3830153159643945No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG15670.36418992725497945No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC15420.35837962209775254No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13750.31956678364747715No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13630.31677783717200825No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA13030.3028331047946638No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA13020.30260069258837474No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12400.2881911357984521No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC12080.28075394519720176No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11430.2656471517884119No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11320.26309061751923213No Hit
GCGTACGCACTGTCTTCTCAGCAGAAAGCAC11220.26076649545634134No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT10890.2530968926488019No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10830.25170241941106747No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG10790.25077277058591113No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10720.24914588514188765No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT10470.24333557998466082No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10280.23891974806516839No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG9910.23032049643247265No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9850.22892602319473818No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9410.2186998861180189No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC9310.21637576405512818No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9300.2161433518488391No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8920.2073116880098543No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG8660.20126897064633834No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT8550.19871243637715852No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG8010.18616217723754852No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7140.16594231529039907No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT7090.16478025425895368No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7030.16338578102121923No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7010.1629209566086411No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT6810.1582727124828596No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6730.156413414832547No Hit
GCAAACCCGCTGCACGAAGAATTTCGTGCCC6540.1519975829130546No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6180.14363074348664792No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5860.13619355288539756No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5750.1336370186162177No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5360.12457294257094383No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5230.12155158388918587No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5120.11899504962000604No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5010.11643851535082624No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4880.11341715666906826No Hit
CTGGTGGACTACCAGGATAAGATGATCAAAG4770.11086062239988843No Hit
GCTGAAGAGACTACCATCGAAAACGGCATCT4690.10900132474957584No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4640.10783926371813048No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4570.10621237827410696No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4470.1038882562112162No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4430.10295860738605991No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4390.10202895856090363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)