FastQCFastQC Report
Sun 21 May 2023
EGAF00007958797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405455
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18900.4661429751760368No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18600.45874388033197266No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16570.4086766718871392No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14740.36354219333834825No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12950.319394260768766No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11450.2823987865484456No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10180.25107595170857433No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9350.23060512263999702No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9170.22616566573355862No Hit
AACGCCACCATCGAAAGCCTGCGTGCCGATG8760.216053569446671No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8190.2019952892429493No Hit
TGTGCCAAATCTACTACCGGTGCATCCTCCA7720.19040337398724888No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7360.18152446017437202No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7040.17363209234070365No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6110.15069489832410501No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6080.14995498883969863No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5840.14403571296444734No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5830.1437890764696452No Hit
ACTGATTATGTAAAACGCAAAGGTTTCATCA5590.13786980059439397No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5460.13466352616196617No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5330.13145725172953843No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5290.13047070575032987No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4950.12208506492705726No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4900.12085188245304658No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4850.11961869997903589No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4760.11739897152581667No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4670.11517924307259744No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4630.1141926970933889No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT4450.10975324018695047No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4340.10704023874412696No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4100.1011209628688757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)