FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958798

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958798
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences371342
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15760.42440661169487964No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15520.4179435668467343No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12140.32692235190202024No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10120.27252505776346336No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9280.24990440079495452No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8970.24155630119943342No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8670.23347749513925167No Hit
ACGCAGACGATAGTAGTTCAGTTCTGCGTCAGCGGTCAGACGCG7470.2011622708985248No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7400.19927721615114907No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6460.17396362382924635No Hit
ACGCAGGCACTGGGTGCGGATATATTCCTGCAGGTAGTTGACCT6250.16830845958711915No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6030.16238400180965257No Hit
GTGGGTGATGTTGCCAATTTTACGTGCCTGGTACTGAGACGGCA6020.16211470827431318No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5980.1610375341329556No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5010.13491606120503472No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC4900.13195383231630142No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4710.126837255144853No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4630.12468290686213786No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4560.12279785211476214No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC4320.11633480726661675No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4200.11310328484254407No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4180.11256469777186529No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG4140.11148752363050772No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT3980.10717882706507748No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT3940.10610165292371991No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT3900.10502447878236235No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG3900.10502447878236235No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)