FastQCFastQC Report
Wed 31 May 2023
EGAF00007958799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences371342
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55191.486231021538097No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15870.42736884058361296No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15330.4128269896752858No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11980.32261365533659003No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11570.31157262038767497No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9760.2628304904912453No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9410.25340521675436656No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8360.22512939554373057No Hit
AACGCCACCATCGAAAGCCTGCGTGCCGATG7810.2103182511000641No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7550.20331661918123992No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7090.19092911655562797No Hit
TGTGCCAAATCTACTACCGGTGCATCCTCCA6650.17908020100069477No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6400.17234786261721002No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6360.17127068847585245No Hit
ACTGATTATGTAAAACGCAAAGGTTTCATCA5760.15511307635548902No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5180.13949405130580433No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5160.13895546423512556No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5120.137878290093768No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5000.13464676766969533No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4940.13303100645765897No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4750.12791442928621055No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4700.1265679616095136No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC4410.11875844908467127No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4390.11821986201399248No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4270.1149883395899198No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4140.11148752363050772No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4100.11041034948915017No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4030.10852529474177444No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG3860.10394730464100478No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA3800.10233154342896844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)