FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958800

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958800
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415332
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18670.4495199021505687No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18090.4355551703215741No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14650.35272986430133No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG12200.2937409108857492No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10920.26292219236658865No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9850.23715966985447787No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9050.2178979707800025No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8230.19815472922866526No Hit
ACGCAGACGATAGTAGTTCAGTTCTGCGTCAGCGGTCAGACGCG8210.19767318675180337No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7210.1735960629087092No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7200.17335529167027824No Hit
ACGCAGGCACTGGGTGCGGATATATTCCTGCAGGTAGTTGACCT6990.16829909566322845No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6950.16733601070950468No Hit
GTGGGTGATGTTGCCAATTTTACGTGCCTGGTACTGAGACGGCA6230.15000048154247686No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5490.13218340989858715No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5340.12857184132212301No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC5280.12712721389153736No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5080.12231178912291854No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC4950.11918176302331629No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4890.11773713559273062No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4850.11677405063900685No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4630.11147708339352615No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG4530.10906937100921671No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4530.10906937100921671No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4450.1071432011017692No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG4300.10353163252530505No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4280.10305009004844318No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4170.1004016064257028No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)