FastQCFastQC Report
Wed 8 May 2024
EGAF00007958801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415332
Total Bases12.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19850.47793090828541984No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18270.43988905261333106No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15200.3659722824150318No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13880.3341904789421475No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13290.3199849758747219No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12510.30120481927710846No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10040.24173432338466574No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9550.22993653270154962No Hit
AACGCCACCATCGAAAGCCTGCGTGCCGATG8870.21356408848824554No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8770.21115637610393612No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8130.19574701684435583No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7850.18900542216828947No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7600.1829861412075159No Hit
TGTGCCAAATCTACTACCGGTGCATCCTCCA7550.1817822850153612No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6180.14879662535032215No Hit
ACTGATTATGTAAAACGCAAAGGTTTCATCA6100.1468704554428746No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6060.14590737048915084No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5800.13964731828994636No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5780.13916577581308448No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5380.12953492627584678No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5340.12857184132212301No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5110.12303410283821135No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5040.12134870416919477No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4790.11532942320842121No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4700.11316248206254273No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4700.11316248206254273No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4660.11219939710881896No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4630.11147708339352615No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4440.10690242986333824No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT4380.10545780243275259No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4370.10521703119432166No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4200.10112392014099564No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)