FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402826
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19410.48184575970766536No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13100.3252024447279967No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11900.29541290780634816No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10860.2695953091409194No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10630.26388564789760344No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9830.2440259566165044No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9780.2427847259114357No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7520.18668109804233093No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7510.1864328519013172No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6640.164835437633122No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6350.1576362995437236No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5760.14298977722391307No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4830.11990288610963544No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4510.11195900959719582No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4440.11022128661009964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)