FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478617
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21990.45944878681701656No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15590.32573017673839416No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11610.24257391609575088No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11280.23567905026357192No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10870.22711270180541016No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10520.2197999653167355No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8280.1729984517892177No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8230.17195377514797844No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6890.1439564411627669No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG6370.1330918040938788No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG6110.1276594855594348No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6020.12577906760520416No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5270.1101089179866156No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4970.10384085813918019No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4910.10258724616969309No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)