FastQCFastQC Report
Wed 31 May 2023
EGAF00007958807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440959
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65981.49628423504226No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13870.31454171476259696No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10990.2492295202048263No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9440.21407885993935943No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9370.2124914107660803No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9280.21045040468614995No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7800.17688719359396224No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7370.16713572010096175No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG5940.13470640127540204No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5610.12722271231565746No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5300.1201925802625641No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG5030.11406956202277309No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4510.10227708244984228No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4430.10046285482323754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)