FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458422
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61091.332614926857786No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14160.30888569920291786No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11120.2425712553062462No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10120.22075729349813056No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9950.21704891999075088No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9340.20374240328780033No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8690.18956332811252513No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7940.1732028567564384No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG6500.14179075175275183No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6430.14026377442618373No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG5430.11844981261806807No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5270.11495957872876955No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4930.10754283171401025No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4650.10143492240773785No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)