FastQCFastQC Report
Sun 21 May 2023
EGAF00007958811

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958811
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546163
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT61561.1271360381424593No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA59821.0952774171813178No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29570.5414134608166427No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA28230.5168786607661082No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA25310.4634147681186752No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG23480.429908287452647No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG21060.38559917094347296No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC20520.3757120127141531No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19520.3574024604376349No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA15420.2823332961039104No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA14380.2632913617363315No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT13910.25468587216636795No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA12990.2378410840719712No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12980.237657988549206No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG12030.22026391388651373No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11510.21074294670272428No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11040.20213745713276074No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA10700.19591220935874454No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC10250.18767291083431137No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT10020.1834617138107122No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8890.16277191973824665No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8610.15764524510082153No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8590.1572790540552912No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8480.1552650033048742No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7980.1461102271666151No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA7810.142997603279607No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7810.142997603279607No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7410.13567378236899974No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7050.1290823435494532No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6750.12358947786649772No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6490.118828994274603No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6010.11004040918187429No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG5990.10967421813634391No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5870.10747707186316174No Hit
GGCGCACCGTCCGGCGGCCCGAGCGACGTTA5610.102716588271267No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG5590.10235039722573665No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5470.10015325095255447No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)