FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515496
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19890.3858419851948415No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14520.28167046883002No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11940.23162158387261977No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11750.22793581327498177No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8960.17381318186756056No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8040.15596629265794498No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7140.13850737930071233No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6540.12686810372922389No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6360.12337632105777736No Hit
CAGAACCGCCGCGACACCGGAGCCGTTATCGTTAATACCCGGGC6160.11949656253394789No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6130.11891459875537347No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5360.10397752843862998No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)