FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515496
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42420.8228967829042321No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19620.3806043111876717No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18760.36392134953520494No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12470.2419029439607679No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12320.23899312506789577No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10150.19689774508434596No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8840.1714853267532629No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8270.16042801496034886No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7260.14083523441501No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7060.13695547589118054No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6740.13074786225305338No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6680.12958393469590454No Hit
GTAAAACTGACCGCTAGCACCCAGTCCTTCA6580.1276440554339898No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5390.1045594922172044No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5340.10358955258624704No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)