FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392872
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12360.3146062839805331No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10350.263444582459427No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10080.25657211509092015No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9340.2377364637846423No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8810.22424606487609194No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8750.22271884990531265No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8130.20693762854059336No Hit
GGAAAAGCCGAAGCGACGCAGCGCACGAGTGTCTGCGGTTACAC7620.19395630128896943No Hit
ACCCGGGTCACCCTTATCGCCTTTGTCGCCTTTCGCGCCTACCA7410.18861104889124194No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6920.17613879329654442No Hit
CAGGGAGGAAGAAGTCACAGAGGCGTTGCAGCGATAGAACATGC6790.17282982752652262No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6460.16443014518723656No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5050.12854059337392332No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4910.12497709177543832No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4460.11352297949459365No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4450.11326844366613045No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4360.11097762120996152No Hit
CGCCAGCAGCGCCAGCTGGCGCGGGGAGACCGCGTCGCCAGCAT4260.10843226292532937No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4130.10512329715530759No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4050.10308701052760187No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA3950.10054165224296972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)