FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392872
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33010.840222769757071No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20710.5271437007473172No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15310.38969435337718134No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10070.25631757926245696No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9810.2496996477224134No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9310.2369728562992527No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9310.2369728562992527No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9300.2367183204707895No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8130.20693762854059336No Hit
GTGAGCGATGCCGTCGCTAACGGCCTGAAGG7570.19268362214665335No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7490.19064733551894764No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC7260.18479301146429372No Hit
TTCGTCGAACTGATGCAGCCGCTGAAACGTT6770.17232075586959622No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6760.17206622004113298No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6240.15883035696104583No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4830.12294080514773259No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC4750.12090451852002687No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4400.11199576452381438No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4400.11199576452381438No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4300.10945040623918223No Hit

[OK]Adapter Content

Adapter graph