FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465368
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26410.5675078647436007No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA22370.4806948479482904No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18770.40333671417029104No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16830.361649275412147No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16740.35971532206769696No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16350.3513348575750804No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15260.3279125337367417No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10810.23228928503893692No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9930.21337951900431487No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9110.19575905519932613No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC9010.19361021814993726No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8780.18866789293634287No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8740.1878083581165873No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7230.15536091867081536No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7170.15407161644118203No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6640.142682780079421No Hit
CAGCGCTTCCACCTCGCGAGAAACTGCATCAGTGAAGCCGGTGC6440.13838510598064327No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6430.1381702222757044No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT6340.1362362689312544No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6160.13236836224235443No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6160.13236836224235443No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6080.13064929260284333No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5870.1261367347991267No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5700.12248371181516562No Hit
TTTGGCAACAACCTGTACTGGCGGCACCGGCGGCGGGCTCAGGT5410.1162520843719379No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5350.11496278214230457No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5150.11066510804352685No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5090.10937580581389353No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5090.10937580581389353No Hit
GGATTCCTTCAGCAGGTTCACCTGTTCGCAGATCTGGTTGGTAA5070.10894603840401575No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG4910.10550789912499356No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4820.10357394578054356No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4750.10206975984597136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)