FastQCFastQC Report
Sun 21 May 2023
EGAF00007958821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465368
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38090.8184920321122209No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC36550.7853999415516323No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC22290.4789757783087793No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19740.42418043354936313No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17680.37991439033195235No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16990.3650874146911691No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16770.3603599731825136No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16610.3569218339034914No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11010.23658695913771466No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10850.23314881985869249No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10850.23314881985869249No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9510.2043544033968816No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG9390.201775798937615No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9350.20091626411785943No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9150.1966185900190817No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7970.171262312836293No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7870.16911347578690414No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7630.16395626686837084No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7590.1630967320486153No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7550.16223719722885974No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7260.15600556978563201No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7100.15256743050660984No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6770.14547626824362656No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6430.1381702222757044No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6340.1362362689312544No Hit
TCCACCGGTGGTAACGGCCTGGTTGGTTTCG6110.13129394371766No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5960.1280706881435767No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA5890.12656650220900448No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5860.12592185109418783No Hit
GGCGAAGGTGTAGTTGGCTTCGCGGATGTTC5430.11668185178181568No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5380.11560743325712125No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5290.11367347991267127No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5280.11345859620773237No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5200.11173952656822128No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4940.10615255023981021No Hit
TACGACGACTTCCATACCGATGAAGATAAAC4910.10550789912499356No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4730.10163999243609359No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4710.10121022502621582No Hit
ACTCGTCTGGAAAACATCAAAACCGACCGTA4670.10035069020646026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)