FastQCFastQC Report
Sun 21 May 2023
EGAF00007958823

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958823
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489329
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39330.8037537117154308No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27790.5679205606044195No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24870.5082470076369886No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24480.5002769098091467No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17560.3588587637356462No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC16020.3273870953898093No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15230.3112425382513605No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15010.3067465856305267No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC14910.30470297080287495No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13800.28201884621594064No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13700.27997523138828884No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13160.2689397113189695No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11900.2431901644905575No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11500.23501570517995052No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10910.2229583776968052No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10440.21335338800684203No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10370.2119228576274858No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10040.20517892869623505No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9980.203952759799644No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8850.18085991224717932No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8610.1759552366608151No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8250.16859822328126883No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7210.1473446290736907No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7110.14530101424603897No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6940.141826869039031No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5900.12057327483145287No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5760.11771221407274042No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5400.11035520069319414No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5180.10585924807236032No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5150.10524616362406478No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5110.1044287176930041No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5090.10401999472747375No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5080.10381563324470856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)