FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958825

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958825
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469161
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40150.855782982814002No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38190.8140062792943147No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26420.5631329117296622No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23620.5034519067015375No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23030.4908762663563254No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16490.35147849032634854No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC14910.3178013517747639No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC14150.3016022218385586No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13710.2922237781912819No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13470.2871082634745855No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12840.27368003734325747No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12780.2724011586640833No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC12480.2660067652682128No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11480.24469212061531115No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11260.24000289879167278No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10320.21996713281794522No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10050.21421217876166176No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9880.2105886891706685No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9650.20568632090050112No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9290.19801304882545648No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8340.17776413640519992No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7700.16412276382734287No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7320.1560231988592402No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6340.13513484709939658No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5800.12362493898682968No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5570.11872257071666228No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5330.1136070559999659No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5300.11296761666037886No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5170.11019671285550164No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4840.10316288012004407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)