FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958826

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958826
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences578543
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24000.4148351980751647No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG21680.3747344622612321No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG19980.3453503023975746No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18980.32806550247777605No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16940.2928045106413871No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG16730.28917470265822937No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG16700.28865615866063543No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG14600.25235807882905853No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13510.23351764691647814No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT11730.20275070305923673No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11720.20257785506003875No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10810.1868486871330221No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10540.18218179115467648No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10090.17440363119076716No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA9440.1631685112428981No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9240.1597115512589384No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7980.13793270335999225No Hit
ACCCTGGCGATGGACGTGACGACGGTGCGGGTCGCCAGCTTTAC7930.13706846336400233No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7790.13464859137523053No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7360.1272161274097172No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7330.12669758341212323No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6700.11580815946265015No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6310.10906708749392872No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6060.10474588751397908No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT5980.10336310352039521No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5920.10232601552520729No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5910.10215316752600931No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)