FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958827

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958827
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences578543
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47700.8244849561743898No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA45960.7944094043139404No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC21820.3771543342500039No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG20840.36021523032860137No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG19760.3415476464152189No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19430.3358436624416854No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18080.3125091825499574No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17330.2995455826101085No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17030.29436014263416893No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG16010.27672964671597444No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC15920.2751740147231926No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT12380.21398582300710578No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11860.20499772704881056No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11580.20015798307126695No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9510.164378447237284No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT9270.16023009525653237No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9160.15832876726535453No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8610.14882212730946534No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7690.1329201113832507No Hit
GCCGGTTCCCAGGAAGCGGAACTGTCTCGTG7680.1327472633840527No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7360.1272161274097172No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7290.1260061914153313No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6780.11719094345623401No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6500.11235119947869043No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6200.10716575950275088No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6190.10699291150355289No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6050.10457303951478109No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5790.10007899153563347No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)