FastQCFastQC Report
Sun 21 May 2023
EGAF00007958828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences601706
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24840.4128261975117416No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG22050.36645803764629237No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG20550.3415289194390616No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19670.32690383675748624No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG17970.29865083612262466No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17790.295659341937757No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG14900.24762924085849233No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14560.24197864073152003No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13350.2218691520443539No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT12240.20342160457100308No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG12010.19959913977922772No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12010.19959913977922772No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11880.19743861620126774No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10860.1804868158203508No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10280.17084755678022157No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA10090.16768986847397235No Hit
ACCCTGGCGATGGACGTGACGACGGTGCGGGTCGCCAGCTTTAC9140.15190142694272618No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8480.14093261493154463No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8340.1386058972322031No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7260.12065693212299695No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7230.12015834975885234No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT7140.11866260266641848No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6910.1148401378746431No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT6490.10785998477661848No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6230.10353893762069849No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6150.10220938464964617No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)