FastQCFastQC Report
Sun 21 May 2023
EGAF00007958829

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958829
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences601706
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA48760.8103625358563817No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC22790.3787564026285262No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG21800.36230318461175387No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21020.3493400431439939No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG19770.3285657779713016No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18660.31011823049795084No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG18550.3082900951627539No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17780.2954931478163754No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG17560.2918368771459816No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC16140.26823731190980316No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC13700.22768594629270772No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT13100.2177142990098154No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12100.20109488687166158No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10700.17782770987824617No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10390.1726756921154185No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT9990.16602792726015694No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9440.15688725058417233No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9240.15356336815654156No Hit
GCCGGTTCCCAGGAAGCGGAACTGTCTCGTG8980.14924232100062157No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7640.12697230873549542No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA7500.12464559103615386No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7460.12398081455062772No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7450.12381462042924617No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT7170.1191611850305631No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7160.11899499090918156No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC7050.11716685557398464No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6970.11583730260293233No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6030.10021505519306773No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)