FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences585769
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT23040.3933291109635368No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG21500.36703888392864764No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG21170.3614052638497428No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18690.3190677553779732No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG17910.30575192610056184No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17390.29687470658228754No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15130.2582929448297879No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG14280.24378210523260876No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13410.22892983411549606No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11790.20127388100087237No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT11770.20093244948093872No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11130.1900066408430627No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10930.18659232564372644No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10370.17703224308558493No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA9790.1671307290075098No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8860.1512541633305962No Hit
ACCCTGGCGATGGACGTGACGACGGTGCGGGTCGCCAGCTTTAC8750.14937628997096125No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8180.13964549165285292No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7210.12308606293607208No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7130.12172033685633755No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6700.11437955917776461No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6630.11318454885799692No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6210.10601448693939078No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6070.1036244662998554No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6050.10328303477992178No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5930.10123444566032003No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5910.1008930141403864No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)