FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences585769
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47240.8064612500832239No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA46620.7958768729652815No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC22680.38718334360473156No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG20910.3569666540906057No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19900.3397243623339576No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18410.3142877140989025No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18090.30882480977996446No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG18000.30728836794026315No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG17010.29038750770354865No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16850.28765605554407964No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC15350.26204869154905774No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT12570.21458971027828377No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12010.20502962772014224No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11510.19649383972180162No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT9480.1618385404485386No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9460.16149710892860497No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8990.15347346821016475No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8980.15330275245019792No Hit
GCCGGTTCCCAGGAAGCGGAACTGTCTCGTG8440.14408410141199005No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7410.12650037813540832No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7120.12154962109637076No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6860.11711101133723362No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6820.11642814829736638No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6700.11437955917776461No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6680.114038127657831No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6530.11147739125832878No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6140.1048194766196231No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5890.10055158262045277No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)