FastQCFastQC Report
Sun 21 May 2023
EGAF00007958838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences597575
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT20520.3433878592645274No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19960.3340166506296281No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG13250.22172949002217296No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC12820.21453374053466093No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11780.19713006735556207No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11440.19144040497008744No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10510.17587750491570095No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9940.1663389532694641No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9600.16064929088398947No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9200.15395557043048988No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9020.1509433962264151No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8910.14910262310170272No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8870.14843325105635274No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT8440.14123750156884074No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG8290.1387273563987784No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC8170.13671924026272853No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7980.13353972304731623No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7840.1311969208885914No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7540.12617663054846673No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7440.12450320043509183No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT7060.11814416600426725No Hit
TGGGCGGCCGCCACCACGACCGCGACCGCGGCCACGACCACGGC6990.11697276492490481No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6970.11663807890222985No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6960.11647073589089235No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6940.11613604986821738No Hit
CGGGCGACCGCCACCACGACCACGACCACGACCGCGGCCACGGC6890.11529933481152993No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6680.11178513157344266No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6620.11078107350541773No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6520.10910764339204283No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6430.10760155629000542No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6330.10592812617663055No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6150.10291595197255575No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT6130.10258126594988076No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)