FastQCFastQC Report
Sun 21 May 2023
EGAF00007958839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences597575
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAGCGGTAATGTTAGCGTTGGTTATAACC21380.35777935823955154No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19940.3336819646069531No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15700.2627285277998578No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14650.24515751160942142No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG14290.23913316320127181No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA13950.23344350081579718No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13540.22658243735096012No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13450.22507635024892272No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12960.21687654269338577No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12560.21018282223988619No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11170.18692214366397522No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11050.18491402752792535No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10280.1720286156549387No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9610.16081663389532694No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9450.15813914571392712No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG9340.15629837258921475No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9180.15362088440781493No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG8590.14374764673890308No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG8510.14240890264820316No Hit
ATGAGCGACGAAGGTCCGGGTACCGGCCCGG8460.1415721875915157No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC8420.14090281554616577No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8400.14056812952349076No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG8250.13805798435342845No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7830.1310295778772539No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7770.13002551980922897No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7260.12149102623101704No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7030.11764213697025479No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6940.11613604986821738No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6740.1127891896414676No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC6540.10944232941471782No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6500.10877295736936787No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6480.10843827134669289No Hit
CTGCACGACGACGCTAACTTTCTGGAACATG6150.10291595197255575No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6120.10241392293854329No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6120.10241392293854329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)