FastQCFastQC Report
Sun 21 May 2023
EGAF00007958840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences572750
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT19960.3484941073766914No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19140.3341772151898734No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG12860.22453077258838935No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC11510.20096027935399388No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11230.1960715844609341No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11110.1939764295067656No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10220.17843736359668266No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9970.17407245744216499No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8800.15364469663902225No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8770.15312090790048014No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8500.14840680925360103No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8320.14526407682234832No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8180.1428197293758184No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7880.13758184199039722No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT7700.13443910955914448No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG7610.1328677433435181No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7570.13216935835879529No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7360.12850283718900044No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC7330.12797904845045832No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7150.1248363160192056No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6990.12204277608031427No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6830.11924923614142295No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6770.11820165866433872No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6680.11663029244871236No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT6620.11558271497162811No Hit
TGGGCGGCCGCCACCACGACCGCGACCGCGGCCACGACCACGGC6520.11383675250982103No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6390.11156700130947185No Hit
CGGGCGACCGCCACCACGACCACGACCACGACCGCGGCCACGGC6370.11121780881711042No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6280.10964644260148407No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6260.10929725010912264No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6190.1080750763858577No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6000.10475774770842426No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5760.1005674378000873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)