FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences572750
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47010.8207769532955042No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC21010.3668267132256656No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19120.333828022697512No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14950.2610213880401571No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13230.2309908336970755No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG13180.230117852466172No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA13160.22976865997381057No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12500.2182453077258839No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12270.21422959406372763No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12130.21178524661719772No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11880.20742034046268004No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10980.1917066783064164No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9980.1742470536883457No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8730.1524225229157573No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG8550.14927979048450457No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8460.1477084242688782No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8140.14212134439109558No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7930.13845482322130076No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC7860.1372326494980358No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7800.13618507202095154No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7700.13443910955914448No Hit
ATGAGCGACGAAGGTCCGGGTACCGGCCCGG7630.13321693583587954No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG7580.132343954604976No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG7370.12867743343518115No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7200.12570929725010913No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC7030.1227411610650371No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7020.12256656481885639No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7010.12239196857267567No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6750.1178524661719773No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6610.1154081187254474No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6230.10877346137058053No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6130.10702749890877346No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6070.1059799214316892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)