FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences580133
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT20670.35629760761756357No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19490.33595744424123436No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG13280.2289130251166543No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC12400.21374408971735792No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12000.20684911908131412No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11390.1963342888613473No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10470.18047585639844657No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10370.17875211373943561No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9240.15927382169261187No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9080.15651583343819434No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9020.15548158784278776No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8590.1480694944090407No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8320.14341538922971112No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT7670.13221106194613994No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7620.13134919061663447No Hit
TGGGCGGCCGCCACCACGACCGCGACCGCGGCCACGACCACGGC7600.13100444208483228No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7500.12928069942582132No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG7430.12807407956451367No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7410.12772933103271145No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC7360.12686745970320598No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7300.1258332141077994No Hit
CGGGCGACCGCCACCACGACCACGACCACGACCGCGGCCACGGC6870.11842112067405233No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6810.11738687507864576No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6700.1154907581537337No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6640.11445651255832714No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6600.11376701549472278No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6510.11221564710161291No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT6490.11187089856981071No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6360.10963003311309648No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6200.10687204485867896No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6190.10669967059277786No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6170.10635492206097569No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6050.10428643087016254No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5910.10187319114754721No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5900.1017008168816461No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)