FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences580133
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46300.7980928511220703No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC21600.3723284143463654No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19500.33612981850713547No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16200.279246310759774No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG14120.2433924634523463No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA13680.2358079957526981No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13620.23477375015729152No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13360.23029201924386306No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13260.22856827658485213No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13120.22615503686223676No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12370.21322696691965462No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10800.1861642071731827No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10630.18323384465286408No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG9370.1615146871493261No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9120.15720533050179875No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8830.15220647679066698No Hit
ATGAGCGACGAAGGTCCGGGTACCGGCCCGG8720.15031035986575492No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8590.1480694944090407No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7880.13583092153006293No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG7740.13341768180744762No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG7680.13238343621204104No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7530.1297978222235246No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7530.1297978222235246No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC7470.12876357662811802No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7340.1265227111714038No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6890.11876586920585451No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC6850.11807637214225014No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6550.11290514416521728No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6510.11221564710161291No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6470.11152615003800852No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6220.10721679339048115No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6210.10704441912458004No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6140.1058377992632724No Hit
CTGCACGACGACGCTAACTTTCTGGAACATG6010.10359693380655814No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5990.10325218527475596No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5930.10221793967934939No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5880.10135606834984393No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)