FastQCFastQC Report
Sun 21 May 2023
EGAF00007958847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558492
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA22060.39499222907400644No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21820.39069494281028194No Hit
ATGTCCAACATGGACATCGATGGTATTAACA16480.29508032344241275No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13320.23849938763670742No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG13260.2374250660707763No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13220.23670885169348888No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13140.23527642293891407No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11500.20591163347013028No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10710.19176639951870394No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10010.17923264791617427No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9570.17135428976601277No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9110.16311782442720754No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9030.16168539567263274No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9020.16150634207831088No Hit
CAGCGTCCGCGCGGCGCTCCGACCCCGACCC8970.1606110741067016No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8250.14771921531552826No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6860.12283076570479075No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6800.12175644413885964No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6720.12032401538428482No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6710.12014496178996298No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6390.1144152467716637No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6220.1113713356681922No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5940.10635783502718034No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5750.10295581673506514No Hit

[OK]Adapter Content

Adapter graph