FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543686
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44030.8098424458235084No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21210.390114882487318No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20950.38533271042476724No Hit
ATGTCCAACATGGACATCGATGGTATTAACA16470.30293220719312247No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG13010.239292532822254No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12520.2302799777812929No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12420.22844068083415794No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11900.21887633670905635No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10590.1947815467015888No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10030.18448148379763318No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9150.16829567066284584No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9090.16719209249456488No Hit
CAGCGTCCGCGCGGCGCTCCGACCCCGACCC8860.16296170951615455No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8390.15431701386462038No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8250.15174199813863148No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8120.14935091210735607No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6740.12396861423689409No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6410.11789893431134882No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6090.11201318408051707No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6050.1112774653016631No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6000.11035781682809563No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5990.11017388713338214No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5870.10796673079682022No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5830.10723101201796625No Hit

[OK]Adapter Content

Adapter graph