FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958852

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958852
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414219
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14980.36164444412255353No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14720.35536757126061336No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14460.3490906983986732No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13510.32615597063389173No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13270.32036193414594694No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC10420.25155775085160265No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9120.22017338654190177No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8590.20737822263102368No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6630.16006025797947462No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6580.15885316704448613No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6170.14895502137758046No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5270.1272273845477875No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5190.12529603905180592No Hit
CAGGTTGTAGCAGCCCCAACCACCTTGCAGCCAGTGACCCGGCA4620.11153520239293707No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4570.11032811145794856No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4370.1054997477179946No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT4290.10356840222201298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)