FastQCFastQC Report
Wed 31 May 2023
EGAF00007958853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414219
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33350.8051296536373271No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30620.7392224885869553No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22530.5439151753058165No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14480.34957353477266856No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14070.3396753891057629No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11620.2805279332913266No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC10800.2607316419575152No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9360.22596742302984654No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6490.15668040336150685No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6150.14847218500358506No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5620.13567702109270702No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5330.12867589366977372No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5090.12288185718182894No Hit
GCGGCTCCACCGACCCTGCCGCAGCCACCGT5060.12215760262083585No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4870.11757065706787956No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4800.11588072975889566No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4450.10743109321397619No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4370.1054997477179946No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4350.10501691134399918No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4160.1004299657910429No Hit

[OK]Adapter Content

Adapter graph