FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007958855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384829
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64721.6817859360910952No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30250.786063420376323No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27340.7104454186145015No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13510.35106501848873134No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12670.32923714169150453No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10930.28402225404010617No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC9700.2520600058727383No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8470.22009775770537046No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5540.14396004459123404No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5290.1374636526872975No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4990.1296679824025736No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4740.12317159049863706No Hit
GCGGCTCCACCGACCCTGCCGCAGCCACCGT4670.12135260076553483No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4570.1187540440039602No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4360.1132970748046535No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4310.11199779642386619No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4180.10861967263381918No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG3990.10368241478682741No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC3940.10238313640604008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)