FastQCFastQC Report
Sun 21 May 2023
EGAF00007958857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389170
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56081.4410154945139655No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46371.1915101369581416No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32390.8322840917850811No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14220.3653930159056453No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11810.3034663514659403No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9800.2518179715805432No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9210.23665750186293907No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC8150.20942004779402318No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8060.20710743376930388No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8020.2060796053138731No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7880.20248220571986536No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG7630.19605827787342292No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7220.18552303620525734No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6950.17858519413109952No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6810.17498779453709176No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6420.1649664670966416No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG6420.1649664670966416No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5930.1523755685176144No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5320.13670118457229488No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5150.13233291363671404No Hit
GGTTACTTCCAGTCCCTGCGTAAAGACTGGG5110.13130508518128323No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4980.1279646427011332No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4940.12693681424570238No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4930.1266798571318447No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA4920.126422900017987No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4850.12462420022098311No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4750.12205462908240615No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4720.12128375774083305No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4480.11511678700824833No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG3980.10226893131536345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)