FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007958859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences375638
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62111.6534535909572514No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26390.7025380818767004No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17430.4640105633615343No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13960.3716343926865759No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11420.3040161006074998No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10300.274200160793104No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7950.21163992993254144No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7540.20072516625048586No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6860.18262263136317414No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6730.17916185263471746No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6120.16292281398580546No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5480.14588513409186504No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5090.13550279790649508No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4830.12858124044958177No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4640.12352317923106822No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4450.11846511801255463No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4420.11766647676752619No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4410.11740026301918335No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4260.11340705679404106No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG3900.10382336185369957No Hit

[OK]Adapter Content

Adapter graph