FastQCFastQC Report
Wed 31 May 2023
EGAF00007958861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412375
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29140.7066383752652319No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19070.46244316459533197No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14990.3635040921491361No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14560.35307668990603214No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12730.30869960594119433No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10990.2665050015156108No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8650.20976053349499846No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7870.19084571082146107No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7500.18187329493785995No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7370.1787208244922704No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6530.15835101545923008No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5760.13967869051227644No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5730.138951197332525No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5540.13434374052743256No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5200.1260988178235829No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4810.11664140648681419No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4600.1115489542285541No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4460.10815398605638071No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4400.10669899969687784No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4270.10354652925128828No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4180.10136404971203396No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)