FastQCFastQC Report
Wed 31 May 2023
EGAF00007958864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420814
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19600.4657639717309785No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13620.3236584334171392No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11040.2623486861178573No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10960.26044760868222067No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10840.2575959925287657No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9390.22313896400785144No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8810.20935615259948578No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8520.20246474689530292No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7940.18868193548693724No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC7220.1715722385662074No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6950.16515610222093371No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT6780.16111631267020585No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6110.1451947891467489No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6090.14471951978783976No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5770.13711521004529317No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5570.13236251645620153No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5540.13164961241783782No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5480.13022380434111033No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5410.12856036158492826No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5330.12665928414929162No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5100.12119368652183625No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5100.12119368652183625No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC4980.11834207036838128No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4900.11644099293274462No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4550.1081237791518343No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4530.10764850979292513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)