FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420814
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20460.48620055416407254No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19410.46124891282134145No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14720.34979824815714305No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11970.28444871130713334No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11450.2720917079754951No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11260.26757664906585804No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11110.26401212887403935No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9500.22575294548185182No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9110.2164851929831232No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8670.20602926708712163No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7660.18202816446220896No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT7200.17109696920729825No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7080.16824535305384325No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6940.16491846754147912No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG6930.16468083286202453No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6520.15493781100438675No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG6260.14875930933856762No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6230.14804640530020388No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5900.14020446087820274No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5550.13188724709729238No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5350.12713455350820077No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5290.12570874543147328No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT5210.12380766799583663No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5200.12357003331638207No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5000.11881733972729044No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4970.1181044356889267No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4960.11786680100947212No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4820.11453991549710799No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4430.10527216299837934No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4390.104321624280561No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4340.10313345088328811No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4320.10265818152437894No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4240.10075710408874229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)