FastQCFastQC Report
Sun 21 May 2023
EGAF00007958866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405863
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18440.4543405040617154No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13630.33582760685255864No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10490.25846159911103006No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10440.2572296563125981No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10360.25525854783510693No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8890.21903942956120662No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8240.2030241731815908No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8050.1983427905475493No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7430.1830666998469927No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC7020.17296476889985044No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6820.16803699770612252No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT6460.15916700955741223No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6150.15152896420713394No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6030.14857230149089717No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5470.13477454214845896No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5310.13083232519347662No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5260.12960038239504462No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5170.12738288535786707No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5170.12738288535786707No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5100.12565816544006228No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4950.12196233704476633No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC4730.11654178873166561No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4480.1103820747395057No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4360.10742541202326894No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4300.10594708066515056No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4090.10077292091173623No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)