FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405863
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58141.43250308601671No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18240.44941273286798744No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14230.3506109204337424No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11560.2848251749974745No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10990.2707810270953499No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10540.25969354190946203No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10360.25525854783510693No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8920.2197785952402658No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8830.21756109820308825No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7760.1911975223166438No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7090.17468948881765523No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6930.17074727186267286No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6830.1682833862658089No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6640.16360200363176736No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG6490.15990617523647144No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG6160.15177535276682033No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6140.15128257564744751No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5590.13773120486469573No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5330.1313251023128494No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5240.12910760527567183No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5090.12541177688037589No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4920.12122317136570714No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT4820.11875928576884319No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4700.11580262305260643No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4600.11333873745574247No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4460.1098892976201329No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4430.10915013194107372No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4420.10890374338138732No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4310.10619346922483695No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4310.10619346922483695No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4260.10496152642640497No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4100.10101930947142262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)