FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549791
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34370.6251466466348121No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16030.29156534028385334No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11930.21699154769721585No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11280.20516887326274894No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11110.20207678917988836No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11100.20189490188089657No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9760.17752200381599553No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9390.17079217375329897No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8710.15842383742185667No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8640.15715062632891408No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8640.15715062632891408No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7420.13496037585191464No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7260.13205017906804586No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6830.12422902521139852No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6720.12222826492248873No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6500.11822674434466915No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6150.1118606888799562No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6120.1113150269829808No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5850.10640406991020224No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)