FastQCFastQC Report
Sun 21 May 2023
EGAF00007958870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543817
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17270.3175700649299305No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16820.3092952224737366No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13020.23941877506587694No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10570.19436685502659903No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8410.1546476112368683No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7530.1384656971003113No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6950.12780034460121695No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6360.11695110671420716No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5910.10867626425801326No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5780.1062857542151128No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)