FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543817
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49480.9098648994054985No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA36470.6706300097275371No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17230.3168345233782688No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17210.31646675260243795No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10210.18774698106164392No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9730.17892048244170375No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8800.16181914136556966No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA6910.12706480304955528No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6070.11161843046466No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5830.1072051811546899No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5730.1053663272755357No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)