FastQCFastQC Report
Wed 31 May 2023
EGAF00007958873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563453
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA38100.6761877210699029No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18650.3309947768491782No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18270.3242506473476936No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11540.2048085643345585No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10450.1854635612908264No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10290.1826239278165171No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8630.15316273052055807No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA7370.1308006169103723No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6820.12103937684243406No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6290.1116330909587845No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6220.11039075131377418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)