FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556702
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21390.38422710893799555No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19540.35099568530380704No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17070.3066272440192419No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14550.26136065614996895No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10830.19453855024770883No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10500.18861078278863738No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC10340.18573671371757242No Hit
CGGTTCGCGCGGCTCACGTGGTACGCGCGGTTCACGCGGAACAC10210.18340153259733216No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9490.17046822177753987No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9300.16705526475565025No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC9060.16274416114905282No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8410.15106825554785144No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7960.14298493628548128No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG7560.13579976360781892No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG7190.12915347888098122No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6700.12035164235084479No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6020.10813684879881875No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG5990.10759796084799408No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5840.10490352109387069No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)